@article{Aslopovsky2025,

title = {Enhancing Two-Photon Absorption of Green Fluorescent Protein by Quantum Entanglement},

author = {Vladislav R. Aslopovsky and Andrei V. Scherbinin and Anastasia V. Bochenkova},

doi = {10.1021/acs.jpcb.4c07869},

year  = {2025},

date = {2025-01-01},

journal = {The Journal of Physical Chemistry B},

volume = {129},

number = {8},

pages = {2168-2174},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Kusochek2024,

title = {Mode-Specific Photoresponse of Retinal Protonated Schiff Base Isomers in the Reversible Photochromic Reactions of Microbial and Animal Rhodopsins},

author = {Pavel A. Kusochek and Olga A. Smitienko and Anastasia V. Bochenkova},

doi = {10.1021/acs.jpcb.4c06832},

year  = {2024},

date = {2024-01-01},

journal = {The Journal of Physical Chemistry B},

volume = {128},

number = {50},

pages = {12471-12482},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Boichenko2023,

title = {Accurate Vertical Electron Detachment Energies and Multiphoton Resonant Photoelectron Spectra of Biochromophore Anions in Aqueous Solution},

author = {Anton N. Boichenko and Anastasia V. Bochenkova},

doi = {10.1021/acs.jctc.2c01082},

year  = {2023},

date = {2023-01-01},

urldate = {2023-01-01},

journal = {Journal of Chemical Theory and Computation},

volume = {19},

number = {13},

pages = {4088-4099},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Robertson2023,

title = {Wavelength dependent mechanism of phenolate photooxidation in aqueous solution},

author = {Kate Robertson and William G. Fortune and Julia A. Davies and Anton N. Boichenko and Michael S. Scholz and Omri Tau and Anastasia V. Bochenkova and Helen H. Fielding},

url = {http://dx.doi.org/10.1039/D3SC00016H},

doi = {10.1039/D3SC00016H},

year  = {2023},

date = {2023-01-01},

journal = {Chem. Sci.},

volume = {14},

issue = {12},

pages = {3257-3264},

publisher = {The Royal Society of Chemistry},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Aslopovsky2023,

title = {Impact of the Protein Environment on Two-Photon Absorption Cross-Sections of the GFP Chromophore Anion Resolved at the XMCQDPT2 Level of Theory},

author = {Vladislav R. Aslopovsky and Andrei V. Scherbinin and Nadezhda N. Kleshchina and Anastasia V. Bochenkova},

url = {https://www.mdpi.com/1422-0067/24/14/11266},

doi = {10.3390/ijms241411266},

issn = {1422-0067},

year  = {2023},

date = {2023-01-01},

journal = {International Journal of Molecular Sciences},

volume = {24},

number = {14},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Andersen2023,

title = {High-Resolution Spectroscopy and Selective Photoresponse of Cryogenically Cooled Green Fluorescent Protein Chromophore Anions},

author = {Lars H. Andersen and Anne P. Rasmussen and Henrik B. Pedersen and Oleg B. Beletsan and Anastasia V. Bochenkova},

doi = {10.1021/acs.jpclett.3c01452},

year  = {2023},

date = {2023-01-01},

journal = {The Journal of Physical Chemistry Letters},

volume = {14},

number = {28},

pages = {6395-6401},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gruber2022,

title = {Light Driven Ultrafast Bioinspired Molecular Motors: Steering and Accelerating Photoisomerization Dynamics of Retinal},

author = {Elisabeth Gruber and Adil M. Kabylda and Mogens Brøndsted Nielsen and Anne P. Rasmussen and Ricky Teiwes and Pavel A. Kusochek and Anastasia V. Bochenkova and Lars H. Andersen},

doi = {10.1021/jacs.1c10752},

year  = {2022},

date = {2022-01-01},

urldate = {2022-01-01},

journal = {Journal of the American Chemical Society},

volume = {144},

number = {1},

pages = {69-73},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Sudarkova2022,

title = {E/Z photoisomerization pathway in pristine and fluorinated di(3-furyl)ethenes},

author = {Svetlana M. Sudarkova and Ilya N. Ioffe},

url = {http://dx.doi.org/10.1039/D2CP02563A},

doi = {10.1039/D2CP02563A},

year  = {2022},

date = {2022-01-01},

journal = {Phys. Chem. Chem. Phys.},

volume = {24},

issue = {38},

pages = {23749-23757},

publisher = {The Royal Society of Chemistry},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Palombo2022,

title = {Retinal chromophore charge delocalization and confinement explain the extreme photophysics of Neorhodopsin},

author = {Riccardo Palombo and Leonardo Barneschi and Laura Pedraza-González and Daniele Padula and Igor Schapiro and Massimo Olivucci},

year  = {2022},

date = {2022-01-01},

journal = {Nature Communications},

volume = {13},

number = {1},

pages = {6652},

publisher = {Nature Publishing Group UK London},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Omri2022,

title = {Liquid-microjet photoelectron spectroscopy of the green fluorescent protein chromophore},

author = {Omri Tau and Alice Henley and Anton N Boichenko and Nadezhda N Kleshchina and River Riley and Bingxing Wang and Danielle Winning and Ross Lewin and Ivan P Parkin and John M Ward and others},

year  = {2022},

date = {2022-01-01},

journal = {Nature communications},

volume = {13},

number = {1},

pages = {507},

publisher = {Nature Publishing Group UK London},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Langeland2021,

title = {Controlling Light-Induced Proton Transfer from the GFP Chromophore},

author = {Jeppe Langeland and Natascha W. Persen and Elisabeth Gruber and Hjalte V. Kiefer and Adil M. Kabylda and Anastasia V. Bochenkova and Lars H. Andersen},

url = {https://chemistry-europe.onlinelibrary.wiley.com/doi/abs/10.1002/cphc.202100068},

doi = {https://doi.org/10.1002/cphc.202100068},

year  = {2021},

date = {2021-01-01},

journal = {ChemPhysChem},

volume = {22},

number = {9},

pages = {833-841},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Kusochek2021,

title = {Insights into the Early-Time Excited-State Dynamics of Structurally Inhomogeneous Rhodopsin KR2},

author = {Pavel A. Kusochek and Andrei V. Scherbinin and Anastasia V. Bochenkova},

doi = {10.1021/acs.jpclett.1c02312},

year  = {2021},

date = {2021-01-01},

urldate = {2021-01-01},

journal = {The Journal of Physical Chemistry Letters},

volume = {12},

number = {35},

pages = {8664-8671},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Grigorenko2021,

title = {Protonation States of Molecular Groups in the Chromophore-Binding Site Modulate Properties of the Reversibly Switchable Fluorescent Protein rsEGFP2},

author = {Bella L. Grigorenko and Tatiana Domratcheva and Igor V. Polyakov and Alexander V. Nemukhin},

doi = {10.1021/acs.jpclett.1c02415},

year  = {2021},

date = {2021-01-01},

journal = {The Journal of Physical Chemistry Letters},

volume = {12},

number = {34},

pages = {8263-8271},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Zhou2021,

title = {Unraveling the Mechanism for Tuning the Fluorescence of Fluorescein Derivatives: The Role of the Conical Intersection and nπ* State},

author = {Panwang Zhou and Zhe Tang and Peng Li and Jianyong Liu},

doi = {10.1021/acs.jpclett.1c01774},

year  = {2021},

date = {2021-01-01},

journal = {The Journal of Physical Chemistry Letters},

volume = {12},

number = {28},

pages = {6478-6485},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Anstoter2020,

title = {Mode-Specific Vibrational Autodetachment Following Excitation of Electronic Resonances by Electrons and Photons},

author = {Cate S. Anstöter and Golda Mensa-Bonsu and Pamir Nag and Miloıfmmode checkselse šfi Rankoviıfmmode acutecelse ćfi and Ragesh Kumar T. P. and Anton N. Boichenko and Anastasia V. Bochenkova and Juraj Fedor and Jan R. R. Verlet},

url = {https://link.aps.org/doi/10.1103/PhysRevLett.124.203401},

doi = {10.1103/PhysRevLett.124.203401},

year  = {2020},

date = {2020-05-01},

journal = {Phys. Rev. Lett.},

volume = {124},

issue = {20},

pages = {203401},

publisher = {American Physical Society},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Kiefer2019,

title = {Intrinsic photoisomerization dynamics of protonated Schiff-base retinal},

author = {Hjalte V Kiefer and Elisabeth Gruber and Jeppe Langeland and Pavel A Kusochek and Anastasia V Bochenkova and Lars H Andersen},

year  = {2019},

date = {2019-01-01},

journal = {Nature communications},

volume = {10},

number = {1},

pages = {1210},

publisher = {Nature Publishing Group UK London},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gholami2019,

title = {Multistate Multiconfiguration Quantum Chemical Computation of the Two-Photon Absorption Spectra of Bovine Rhodopsin},

author = {Samira Gholami and Laura Pedraza-González and Xuchun Yang and Alexander A. Granovsky and Ilya N. Ioffe and Massimo Olivucci},

doi = {10.1021/acs.jpclett.9b02291},

year  = {2019},

date = {2019-01-01},

journal = {The Journal of Physical Chemistry Letters},

volume = {10},

number = {20},

pages = {6293-6300},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Anstoter2018,

title = {Electronic structure of the para-dinitrobenzene radical anion: a combined 2D photoelectron imaging and computational study},

author = {Cate S. Anstöter and Thomas E. Gartmann and Laurence H. Stanley and Anastasia V. Bochenkova and Jan R. R. Verlet},

url = {http://dx.doi.org/10.1039/C8CP04877K},

doi = {10.1039/C8CP04877K},

year  = {2018},

date = {2018-01-01},

journal = {Phys. Chem. Chem. Phys.},

volume = {20},

issue = {37},

pages = {24019-24026},

publisher = {The Royal Society of Chemistry},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Bochenkova2017,

title = {Mechanism of resonant electron emission from the deprotonated GFP chromophore and its biomimetics},

author = {Anastasia V. Bochenkova and Ciarán R. S. Mooney and Michael A. Parkes and Joanne L. Woodhouse and Lijuan Zhang and Ross Lewin and John M. Ward and Helen C. Hailes and Lars H. Andersen and Helen H. Fielding},

url = {http://dx.doi.org/10.1039/C6SC05529J},

doi = {10.1039/C6SC05529J},

year  = {2017},

date = {2017-01-01},

journal = {Chem. Sci.},

volume = {8},

issue = {4},

pages = {3154-3163},

publisher = {The Royal Society of Chemistry},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Svendsen2017,

title = {Origin of the Intrinsic Fluorescence of the Green Fluorescent Protein},

author = {Annette Svendsen and Hjalte V. Kiefer and Henrik B. Pedersen and Anastasia V. Bochenkova and Lars H. Andersen},

doi = {10.1021/jacs.7b04987},

year  = {2017},

date = {2017-01-01},

journal = {Journal of the American Chemical Society},

volume = {139},

number = {25},

pages = {8766-8771},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ioffe2017,

title = {Tuning Stilbene Photochemistry by Fluorination: State Reordering Leads to Sudden Polarization near the Franck–Condon Region},

author = {Ilya N. Ioffe and Martin Quick and Michael T. Quick and Alexander L. Dobryakov and Celin Richter and Alex A. Granovsky and Falko Berndt and Rainer Mahrwald and Nikolaus P. Ernsting and Sergey A. Kovalenko},

doi = {10.1021/jacs.7b09611},

year  = {2017},

date = {2017-01-01},

journal = {Journal of the American Chemical Society},

volume = {139},

number = {42},

pages = {15265-15274},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Kiefer2016,

title = {Decoupling Electronic versus Nuclear Photoresponse of Isolated Green Fluorescent Protein Chromophores Using Short Laser Pulses},

author = {Hjalte V. Kiefer and Henrik B. Pedersen and Anastasia V. Bochenkova and Lars H. Andersen},

url = {https://link.aps.org/doi/10.1103/PhysRevLett.117.243004},

doi = {10.1103/PhysRevLett.117.243004},

year  = {2016},

date = {2016-12-01},

journal = {Phys. Rev. Lett.},

volume = {117},

issue = {24},

pages = {243004},

publisher = {American Physical Society},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Quick2016,

title = {Perpendicular State of an Electronically Excited Stilbene: Observation by Femtosecond-Stimulated Raman Spectroscopy},

author = {Martin Quick and Alexander L. Dobryakov and Ilya N. Ioffe and Alex A. Granovsky and Sergey A. Kovalenko and Nikolaus P. Ernsting},

doi = {10.1021/acs.jpclett.6b01923},

year  = {2016},

date = {2016-01-01},

journal = {The Journal of Physical Chemistry Letters},

volume = {7},

number = {20},

pages = {4047-4052},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Dilger2015,

title = {Direct Measurement of the Isomerization Barrier of the Isolated Retinal Chromophore},

author = {Jonathan Dilger and Lihi Musbat and Mordechai Sheves and Anastasia V. Bochenkova and David E. Clemmer and Yoni Toker},

url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/anie.201411894 year = 2015},

doi = {https://doi.org/10.1002/anie.201411894},

year  = {2015},

date = {2015-03-10},

journal = {Angewandte Chemie International Edition},

volume = {54},

number = {16},

pages = {4748-4752},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Granovsky2015,

title = {Communication: An efficient approach to compute state-specific nuclear gradients for a generic state-averaged multi-configuration self consistent field wavefunction},

author = {Alexander A. Granovsky},

url = {https://doi.org/10.1063/1.4938169},

doi = {10.1063/1.4938169},

issn = {0021-9606},

year  = {2015},

date = {2015-01-01},

journal = {The Journal of Chemical Physics},

volume = {143},

number = {23},

pages = {231101},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Moreno2015,

title = {Two-Photon-Induced versus One-Photon-Induced Isomerization Dynamics of a Bistable Azobenzene Derivative in Solution},

author = {J. Moreno and M. Gerecke and A. L. Dobryakov and I. N. Ioffe and A. A. Granovsky and D. Bléger and S. Hecht and S. A. Kovalenko},

doi = {10.1021/acs.jpcb.5b07008},

year  = {2015},

date = {2015-01-01},

journal = {The Journal of Physical Chemistry B},

volume = {119},

number = {37},

pages = {12281-12288},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Russell2015,

title = {Hidden photoinduced reactivity of the blue fluorescent protein mKalama1},

author = {Russell B. Vegh and Dmitry A. Bloch and Andreas S. Bommarius and Michael Verkhovsky and Sergei Pletnev and Hideo Iwaï and Anastasia V. Bochenkova and Kyril M. Solntsev},

url = {http://dx.doi.org/10.1039/C5CP00887E},

doi = {10.1039/C5CP00887E},

year  = {2015},

date = {2015-01-01},

journal = {Phys. Chem. Chem. Phys.},

volume = {17},

issue = {19},

pages = {12472-12485},

publisher = {The Royal Society of Chemistry},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Quick2014,

title = {Photoisomerization Dynamics and Pathways of trans- and cis-Azobenzene in Solution from Broadband Femtosecond Spectroscopies and Calculations},

author = {M. Quick and A. L. Dobryakov and M. Gerecke and C. Richter and F. Berndt and I. N. Ioffe and A. A. Granovsky and R. Mahrwald and N. P. Ernsting and S. A. Kovalenko},

doi = {10.1021/jp504999f},

year  = {2014},

date = {2014-01-01},

journal = {The Journal of Physical Chemistry B},

volume = {118},

number = {29},

pages = {8756-8771},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gozem2014,

title = {Shape of Multireference, Equation-of-Motion Coupled-Cluster, and Density Functional Theory Potential Energy Surfaces at a Conical Intersection},

author = {Samer Gozem and Federico Melaccio and Alessio Valentini and Michael Filatov and Miquel Huix-Rotllant and Nicolas Ferré and Luis Manuel Frutos and Celestino Angeli and Anna I. Krylov and Alexander A. Granovsky and Roland Lindh and Massimo Olivucci},

doi = {10.1021/ct500154k},

year  = {2014},

date = {2014-01-01},

journal = {Journal of Chemical Theory and Computation},

volume = {10},

number = {8},

pages = {3074-3084},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Bochenkova2014,

title = {UV Excited-State Photoresponse of Biochromophore Negative Ions},

author = {Anastasia V. Bochenkova and Benedikte Klærke and Dennis B. Rahbek and Jyoti Rajput and Yoni Toker and Lars H. Andersen},

url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/anie.201404609},

doi = {https://doi.org/10.1002/anie.201404609},

year  = {2014},

date = {2014-01-01},

journal = {Angewandte Chemie International Edition},

volume = {53},

number = {37},

pages = {9797-9801},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ioffe2013,

title = {Photoisomerization of Stilbene: The Detailed XMCQDPT2 Treatment},

author = {I. N. Ioffe and A. A. Granovsky},

doi = {10.1021/ct400647w},

year  = {2013},

date = {2013-01-01},

journal = {Journal of Chemical Theory and Computation},

volume = {9},

number = {11},

pages = {4973-4990},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gozem2013,

title = {Mapping the Excited State Potential Energy Surface of a Retinal Chromophore Model with Multireference and Equation-of-Motion Coupled-Cluster Methods},

author = {Samer Gozem and Federico Melaccio and Roland Lindh and Anna I. Krylov and Alexander A. Granovsky and Celestino Angeli and Massimo Olivucci},

doi = {10.1021/ct400460h},

year  = {2013},

date = {2013-01-01},

journal = {Journal of Chemical Theory and Computation},

volume = {9},

number = {10},

pages = {4495-4506},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Bochenkova2013,

title = {Ultrafast dual photoresponse of isolated biological chromophores: link to the photoinduced mode-specific non-adiabatic dynamics in proteins},

author = {Anastasia V. Bochenkova and Lars H. Andersen},

url = {http://dx.doi.org/10.1039/C3FD20150C},

doi = {10.1039/C3FD20150C},

year  = {2013},

date = {2013-01-01},

journal = {Faraday Discuss.},

volume = {163},

issue = {0},

pages = {297-319},

publisher = {The Royal Society of Chemistry},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Toker2012,

title = {Direct and Indirect Electron Emission from the Green Fluorescent Protein Chromophore},

author = {Y. Toker and D. B. Rahbek and B. Klærke and A. V. Bochenkova and L. H. Andersen},

url = {https://link.aps.org/doi/10.1103/PhysRevLett.109.128101},

doi = {10.1103/PhysRevLett.109.128101},

year  = {2012},

date = {2012-09-01},

journal = {Phys. Rev. Lett.},

volume = {109},

issue = {12},

pages = {128101},

publisher = {American Physical Society},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gozem2012,

title = {Dynamic Electron Correlation Effects on the Ground State Potential Energy Surface of a Retinal Chromophore Model},

author = {Samer Gozem and Mark Huntress and Igor Schapiro and Roland Lindh and Alexander A. Granovsky and Celestino Angeli and Massimo Olivucci},

doi = {10.1021/ct3003139},

year  = {2012},

date = {2012-01-01},

journal = {Journal of Chemical Theory and Computation},

volume = {8},

number = {11},

pages = {4069-4080},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Dobryakov2012,

title = {Femtosecond Raman spectra of cis-stilbene and trans-stilbene with isotopomers in solution},

author = {A. L. Dobryakov and I. Ioffe and A. A. Granovsky and N. P. Ernsting and S. A. Kovalenko},

doi = {10.1063/1.4769971},

issn = {0021-9606},

year  = {2012},

date = {2012-01-01},

journal = {The Journal of Chemical Physics},

volume = {137},

number = {24},

pages = {244505},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Toker2012_2,

title = {Probing the Barrier for Internal Rotation of the Retinal Chromophore},

author = {Yoni Toker and Annette Svendsen and Anastasia V. Bochenkova and Lars H. Andersen},

url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/anie.201203746},

doi = {https://doi.org/10.1002/anie.201203746},

year  = {2012},

date = {2012-01-01},

journal = {Angewandte Chemie International Edition},

volume = {51},

number = {35},

pages = {8757-8761},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Granovsky2011,

title = {Extended multi-configuration quasi-degenerate perturbation theory: The new approach to multi-state multi-reference perturbation theory},

author = {Alexander A. Granovsky},

url = {https://doi.org/10.1063/1.3596699},

doi = {10.1063/1.3596699},

issn = {0021-9606},

year  = {2011},

date = {2011-01-01},

journal = {The Journal of Chemical Physics},

volume = {134},

number = {21},

pages = {214113},

keywords = {},

pubstate = {published},

tppubtype = {article}

}